SNP Profiles matching MAN 15/2 [BRA]

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 Key

 1234567891011121314
_Input profile
CCAACGCCCTCCTTGTCTTTAAAGCTAA
1._MAN_15_/2_[BRA]
CCAACGCCCTCCTTGTCTTTAAAGCTAA
2._RUQ_86
CCAGCGCCCTCCTTGTCTTTAAAGCTAA
3._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
4._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
5._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
6._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
7._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
8._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
9._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
10._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
11._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
12._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
13._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
14._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
15._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
16._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
17._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
18._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
19._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
20._GC-05-055-2-06
CCAACGCCCT_TTGTCCTTAAAGCTAA
21._GC-05-055-2-06
CCAACGCCCT_TTGTCCTTAAAGCTAA
22._GC-05-055-2-06
CCAACGCCCT_TTGTCCTTAAAGCTAA
23._GC-05-055-2-06
CCAACGCCCT_TTGTCCTTAAAGCTAA
24._GC-05-055-2-06
CCAACGCCCT_TTGTCCTTAAAGCTAA
25._GC-05-148-4-01
CCAACGCCCT_TTGTCCTTAAAGCTAA
26._GC-05-148-4-01
CCAACGCCCT_TTGTCCTTAAAGCTAA
27._GC-05-148-4-01
CCAACGCCCT_TTGTCCTTAAAGCTAA
28._GC-05-148-4-01
CCAACGCCCT_TTGTCCTTAAAGCTAA
29._GC-05-148-4-01
CCAACGCCCT_TTGTCCTTAAAGCTAA
30._RUQ_86
_AACGCC___-____CTAA
31._MAN_15_/2_[BRA]
CCAACGCCCTCCTTGTCTTTAAGGCTAA
32._MAN_15_/2_[BRA]
CCAACGCCCTCCTTGTCTTTAAGGCTAA
33._GC-05-072-2-23
CCAACGCCCTCCTTGTCTTTAAGGCTAA
34._GC-05-072-2-23
CCAACGCCCTCCTTGTCTTTAAGGCTAA
35._MAN_15_/2_[BRA]
CCAACGCCCT_TTGTCTTTAAGGCTAA
36._MAN_15_/2_[BRA]
CCAACGCCCT_TTGTCTTTAAGGCTAA
37._MAN_15_/2_[BRA]
CCAACGCCCT_TTGTCTTTAAGGCTAA
38._GC-05-072-2-23
CCAACGCCCT_TTGTCTTTAAGGCTAA
39._GC-05-072-2-23
CCAACGCCCT_TTGTCTTTAAGGCTAA
40._GC-05-072-2-23
CCAACGCCCT_TTGTCTTTAAGGCTAA
41._RUQ_87
_AACGCC___-____CTAA
 1516171819202122232425262728
_Input profile
AAGGCTCTGGGGAACCACGGGTCCACAG
1._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACGGGTCCACAG
2._RUQ_86
AAGGCTCTGGGGAACCACGGGTCCACAG
3._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
4._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
5._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
6._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
7._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
8._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
9._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
10._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
11._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
12._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
13._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
14._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
15._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
16._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
17._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
18._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
19._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
20._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
21._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
22._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
23._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
24._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
25._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
26._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
27._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
28._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
29._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
30._RUQ_86
___TTGGGG_CCACCGGTCCACAG
31._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
32._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
33._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
34._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
35._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
36._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
37._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
38._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
39._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
40._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
41._RUQ_87
___TTGGGG_CCACCGGTCCACAG
 2930313233343536373839   
_Input profile
GGAATTAGCGACCTGTCCATGGX_XX_XX_X
1._MAN_15_/2_[BRA]
GGAATTAGCGACCTGTCCATGGX_XX_XX_X
2._RUQ_86
GGAATTAGCGACCTGTCCATGGX_XX_XX_X
3._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
4._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
5._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
6._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
7._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
8._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
9._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
10._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
11._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
12._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
13._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
14._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
15._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
16._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
17._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
18._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
19._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
20._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
21._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
22._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
23._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
24._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
25._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
26._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
27._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
28._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
29._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
30._RUQ_86
_AATTAGCGACCTGTCC__X_XX_XX_X
31._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
32._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
33._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
34._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
35._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
36._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
37._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
38._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
39._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
40._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
41._RUQ_87
_AATTAACGACCCGTCC__X_XX_XX_X

Input profile: MAN_15_/2_[BRA]

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/476 T2
 Dapeng Zhang, 2016

1._MAN_15_/2_[BRA]

identical
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0297
 Dapeng Zhang, 2016

2._MAN_15_/2_[BRA] RUQ_86

98.7 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

3._IMC_119 GC-08-050-1-61

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._IMC_119 GC-08-050-1-61

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

5._IMC_119 GC-08-050-1-61

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

6._IMC_119 GC-08-050-1-61

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._IMC_119 GC-08-050-1-61

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._IMC_119 GC-08-050-1-61

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._IMC_119 GC-08-050-1-61

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._LP_1_/41_[POU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 2 > FP
 Dapeng Zhang, 2016

11._LP_1_/41_[POU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 1 > FP
 Dapeng Zhang, 2016

12._LP_1_/41_[POU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 5
 Dapeng Zhang, 2016

13._LP_1_/41_[POU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 4
 Dapeng Zhang, 2016

14._LP_1_/41_[POU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 3
 Dapeng Zhang, 2016

15._LP_1_/41_[POU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 3 > FP
 Dapeng Zhang, 2016

16._LP_1_/41_[POU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 1 > FP
 Dapeng Zhang, 2016

17._LP_1_/41_[POU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 5
 Dapeng Zhang, 2016

18._LP_1_/41_[POU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 4
 Dapeng Zhang, 2016

19._LP_1_/41_[POU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._LP_1_/41_[POU] GC-05-055-2-06

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._LP_1_/41_[POU] GC-05-055-2-06

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._LP_1_/41_[POU] GC-05-055-2-06

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

23._LP_1_/41_[POU] GC-05-055-2-06

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._LP_1_/41_[POU] GC-05-055-2-06

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._LP_1_/41_[POU] GC-05-148-4-01

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

26._LP_1_/41_[POU] GC-05-148-4-01

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

27._LP_1_/41_[POU] GC-05-148-4-01

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._LP_1_/41_[POU] GC-05-148-4-01

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._LP_1_/41_[POU] GC-05-148-4-01

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._MAN_15_/2_[BRA] RUQ_86

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 5 > FP
 Dapeng Zhang, 2016

32._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 2 > FP
 Dapeng Zhang, 2016

33._MAN_15_/2_[BRA] GC-05-072-2-23

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

34._MAN_15_/2_[BRA] GC-05-072-2-23

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

35._MAN_15_/2_[BRA]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 3 > FP
 Dapeng Zhang, 2016

36._MAN_15_/2_[BRA]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 1 > FP
 Dapeng Zhang, 2016

37._MAN_15_/2_[BRA]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

38._MAN_15_/2_[BRA] GC-05-072-2-23

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

39._MAN_15_/2_[BRA] GC-05-072-2-23

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

40._MAN_15_/2_[BRA] GC-05-072-2-23

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

41._MAN_15_/60_[BRA] RUQ_87

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25